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Contact



Programming Languages

Expertise: R and Rstudio, Bash, AWK, markdown/Rmarkdown
Familiarity: Git/Github, python


Languages

Spanish - Native
English - B1 (TOEFL-IBT)

Disclaimer

Made with the R package pagedown.

The source code is available at EveliaCoss/CV and is powered by nstrayer/cv.

Last updated on 2024-02-08.

Main

Evelia Lorena Coss Navarrete

Postdoctoral fellowship at Laboratorio Internacional de Investigacion Sobre el Genoma Humano - UNAM | Gene regulation | Evolution | Bioinformatics | Autoimmune diseases | lncRNAs

Education

PhD, Plant Biotechnology

Centro de Investigacion y de Estudios Avanzados del IPN (Cinvestav), UGA-Langebio

Guanajuato, Mexico

2023 - 2018

  • Dr. Selene Fernandez Valverde
  • Identification and characterization of conserved long non-coding RNAs in Brassicaceae.
  • Grade: 9.3/10. First person to graduate from the generation.

M. Sc., Plant Biotechnology

Centro de Investigacion y de Estudios Avanzados del IPN (Cinvestav), UGA-Langebio

Guanajuato, Mexico

2018 - 2016

  • Dr. Raul Alvarez Venegas and Dr. Stefan de Folter
  • Effect of priming activation on bean nodule development and its relationship against Pseudomonas syringae pv. phaseolicola.
  • Grade: 9.4/10. Second person to graduate from the generation.

B.Sc.,Biotechnology Engineering

Universidad Politecnica de Sinaloa (UPSIN).

Sinaloa, Mexico

2016 - 2012

  • Grade: 9.6/10.

Research Experience

Professional Practices 3 | Undergraduate Thesis Student

Centro de Investigacion y de Estudios Avanzados del IPN (Cinvestav), Irapuato.

Queretaro, Mexico

2015

  • Dr. Raul Alvarez Venegas, Dr. Aaron Barraza Celis and Dr. Alejandra Hernandez Barrera
  • Histochemical analysis of the effect of bean (Phaseolus vulgaris l.) trithorax group methyltransferases during nodulation.

Research Stay 1 (Delfin project)

Universidad Politecnica de Sinaloa (UPSIN).

Sinaloa, Mexico

2015

  • Dr. Jesus Aaron Salazar Leyva
  • Characterization of the proteolytic properties of the crude extract of aguama fruit (Bromelia pinguin L).
  • Protease analysis by zymography.

Professional Practices 2

Centro de Investigacion y de Estudios Avanzados del IPN (Cinvestav), Irapuato.

Guanajuato, Mexico

2014

  • Dr. Raul Alvarez Venegas and Dr. Aaron Barraza Celis
  • Analysis of histone methyltransferases expression in different tissues of bean (Phaseolus vulgaris) plant.

Social Service

Facultad de Ciencias del Mar (FACIMAR), Universidad Autonoma de Sinaloa (UAS)

Sinaloa, Mexico

2014

  • Dr. Miguel Angel Hurtado Oliva and M.C. Idalia Osuna Ruiz
  • Standardization of biochemical methods in aquatic organisms.

Research Stay 1 (Delfin project)

Facultad de Ciencias del Mar (FACIMAR), Universidad Autonoma de Sinaloa (UAS)

Sinaloa, Mexico

2014

  • M.C. Idalia Osuna Ruiz.
  • Standardization of biochemical methods for microalgae.

Professional Practices 1

Centro de Investigacion en Alimentacion y Desarrollo (CIAD)

Sinaloa, Mexico

2013

  • M.P.A. Noemi Garcia Aguilar and M.C. Gabriela Velasco Blanco
  • Cultivation of herbs (Mentha spicata), oregano (Origanum vulgare), radish (Raphanus sativus), green forage and Tilapia (Oreochromis sp) in an aquaponic system.

Other Experience and Professional Memberships

Carpentries

N/A

N/A

2024-present

  • Certified Instructor

Comunidad de Desarrolladores de Software en Bioinformatica (CDSB)

N/A

N/A

2023-present

Iberoamerican Society for Bioinformatics, Founding member

N/A

N/A

2023-present

Rladies, Morelia

N/A

N/A

2021-present

  • Founding Member




Honors

Posdoctoral Felloship, CONACYT

N/A

N/A

2024-present

PhD Fellowship, CONACYT

N/A

N/A

2018-2022

MsC. Fellowship, CONACYT

N/A

N/A

2016-2018

Teaching Experience

Introduction to RNA-seq data analysis with R

Estudios Superiores, Unidad Juriquilla (ENES), UNAM

Queretaro, Mexico

2024

  • Main instructor: Dr. Alejandra Medina-Rivera
  • Instructor for RNAseq_classFEB2024
  • Bioinformatics and Statistics 2, Genomic Sciences Program

CDSB 2023 - Quality control in scRNA-Seq

N/A

Virtual event

2023

Make your CV in R

Centro de Ciencias Matematicas (CCM), UNAM

Virtual event

2023

Workshop: Analysis of RNA-Seq Data

Laboratorio Internacional de Investigacion sobre el Genoma Humano (LIIGH) UNAM

Virtual event

2023

Workshop: Database analysis in the medical area. Creating your analysis flows with R/Bioconductor.

Centro Universitario de Ciencias de la Saludo (CUCS) de la Universidad de Guadalajara (UdG)

Guadalajara, Mexico

2023

Viernes de Bioinformatica (Bioinformatics Friday)

Laboratorio Internacional de Investigacion sobre el Genoma Humano (LIIGH) UNAM

Queretaro, Mexico

2023

Introduction to RNA-seq data analysis with R

Estudios Superiores, Unidad Juriquilla (ENES), UNAM

Queretaro, Mexico

2023

Data analysis with R

Centro de Ciencias Matematicas (CCM), UNAM

Virtual event

2023

Helper in R Workshop and Git/Github

Centro de Ciencias Matematicas (CCM), UNAM

Virtual event

2022

Rmarkdown Introduction

Centro de Ciencias Matematicas (CCM), UNAM

Virtual event

2022

Data analysis and graphs in R

Centro de Ciencias Matematicas (CCM), UNAM

Virtual event

2022

Data Science Writing

Plants & Python: A series of lessons in coding, plant biology, computation, and bioinformatics

N/A

N/A

2022

  • VanBuren R , Rougon-Cardoso A, Amezquita EJ, Coss-Navarrete EL, Espinosa-Jaime A, Gonzalez-Iturbe OA, Luckie-Duque AC, Mendoza-Galindo E, Pardo J, Rodriguez-Guerrero G, Rosiles-Loeza PY, Vasquez-Cruz M, Fernandez-Valverde SL, Hernandez-Hernandez T, Palande S, and Chitwood. DH. Plants & Python: A series of lessons in coding, plant biology, computation, and bioinformatics, (2022). The Plant Cell, Volume 34, Issue 7, July 2022, Page e1, https://doi.org/10.1093/plcell/koac187

Publications

Transcriptome-guided annotation and functional classification of long non-coding RNAs in Arabidopsis thaliana

N/A

N/A

2022

  • Corona-Gomez, J.A., Coss-Navarrete, E.L., Garcia-Lopez, I.J. et al. Transcriptome-guided annotation and functional classification of long non-coding RNAs in Arabidopsis thaliana. Sci Rep 12, 14063 (2022). https://doi.org/10.1038/s41598-022-18254-0

Capter 6- Induction of plant resistance to biotic stress by priming with B-aminobutyric acid (BABA) and its effect on nitrogen-fixing nodule development

N/A

N/A

2020

  • Coss-Navarrete EL, Diaz-Valle A, Alvarez-Venegas R. Chapter 6 - Induction of plant resistance to biotic stress by priming with B-aminobutyric acid (BABA) and its effect on nitrogen-fixing nodule development, Editor(s): Mohammad Anwar Hossain, Fulai Liu, David J. Burritt, Masayuki Fujita, Bingru Huang, Priming-Mediated Stress and Cross-Stress Tolerance in Crop Plants, Academic Press, 2020, Pages 101-114, ISBN 9780128178928, https://doi.org/10.1016/B978-0-12-817892-8.00006-4.

Down-regulation of PvTRX1h increases nodule number and affects auxin, starch, and metabolic fingerprints in the common bean (Phaseolus vulgaris L.)

N/A

N/A

2018

  • Barraza A, Coss-Navarrete EL, Vizuet-de-Rueda JC, Martinez-Aguilar K, Hernandez-Chavez JL, Ordaz-Ortiz JJ, Winkler R, Tiessen A, Alvarez-Venegas R. Down-regulation of PvTRX1h increases nodule number and affects auxin, starch, and metabolic fingerprints in the common bean (Phaseolus vulgaris L.) (2018). Plant Science, Volume 274,Pages 45-58, ISSN 0168-9452, https://doi.org/10.1016/j.plantsci.2018.05.006

CARACTERIZACION PARCIAL DE LA ACTIVIDAD COAGULANTE Y CASEINOLITICA DE LAS PROTEASAS DEL FRUTO DE AGUAMA (Bromelia pinguin L.)

N/A

N/A

2017

  • Moreno-Henandez, J. M., Hernandez-Mancillas, X. D., Coss Navarrete, E. L., Banuelos-Perez, M. de J., Salazar-Leyva, J. A., Osuna-Ruiz, I., Rodriguez-Tirado, V. A., & Mazorra-Manzano, M. Angel. (2017). CARACTERIZACION PARCIAL DE LA ACTIVIDAD COAGULANTE Y CASEINOLITICA DE LAS PROTEASAS DEL FRUTO DE AGUAMA (Bromelia pinguin L.). Biotecnia, 19(2), 19-24. https://doi.org/10.18633/biotecnia.v19i2.380

Partial Characterization of the Proteolytic Properties of an Enzymatic Extract From Aguama Bromelia pinguin L. Fruit Grown in Mexico

N/A

N/A

2016

  • Moreno-Hernandez, JM, Hernandez-Mancillas, XD, Coss-Navarrete, EL, Mazorra-Manzano, MA, Osuna-Ruiz I, Rodriguez-Tirado, VA, Salazar Leyva JA. Partial Characterization of the Proteolytic Properties of an Enzymatic Extract From Aguama Bromelia pinguin L. Fruit Grown in Mexico. Appl Biochem Biotechnol 182, 181-196 (2017). https://doi.org/10.1007/s12010-016-2319-x

Talks and Posters

Sociedad Mexicana de Bioqumica (SMB) X

Poster

Yucatan, Mexico

2022

  • Co-authors: M.C. Evelia Lorena Coss Navarrete, Dr. Jose Antonio Corona-Gomez, Dr. Laurence Hurst, Dr. Stewart Gillmor, Dr. Katarzyna Oktaba, and Dr. Selene L. Fernandez-Valverde
  • Conservation analysis of sequence-divergent lincRNAs in Brassicaceae

FASEB 2021: The Mechanisms of Plany Development

Poster

Virtual event

2021

  • Co-authors: M.C. Evelia Lorena Coss Navarrete, Dr. Jose Antonio Corona-Gomez, Dr. Laurence Hurst, Dr. Stewart Gillmor, Dr. Katarzyna Oktaba, and Dr. Selene L. Fernandez-Valverde
  • Transcriptomic-informed annotation and functional classification of long non-coding RNAs in Arabidopsis thaliana

EMBL Symposium 2021: The Non-Coding Genome

Poster

Virtual event

2021

  • Co-authors: M.C. Evelia Lorena Coss Navarrete, Dr. Jose Antonio Corona-Gomez, Dr. Laurence Hurst, Dr. Stewart Gillmor, Dr. Katarzyna Oktaba, and Dr. Selene L. Fernandez-Valverde
  • Transcriptomic-informed annotation and functional classification of long non-coding RNAs in Arabidopsis thaliana

2nd Interinstitutional Congress of Young Researchers

Talk

Chihuahua, Mexico

2015

  • Co-authors: Coss Navarrete EL, Hernandez-Mancillas, XD, Salazar Leyva, JA.
  • Biochemical characterization of a crude protease extract obtained from the wild plant aguama (Bromelia pinguin) native to southern Sinaloa.
  • Biotechnology and agricultural science

Delfin, Programa Interinstitucional para el fortalecimiento de la investigacion y el posgrado del pacifico

Talk

Nayarit, Mexico

2014

  • Co-authors: Coss Navarrete EL, Osuna-Ruiz I
  • Standardization of biochemical methods in aquatic organisms.

Courses

Data Analysis - Python, Bash and GIT

Helper

Morelia, Mexico

2024

Instructor training with The Carpentries

N/A

Virtual event

2023

  • The Carpentries

CDSB 2023: Creando paquetes de R/Bioconductor para analisis transcriptomico de celula unica

Instructor and helper

Virtual event

2023

  • Main instructor: Dr. Joselyn Cristina Chavez Fuentes, Dr. Leonardo Collado-Torres, Dr. Alejandra Medina Rivera, Dra. Evelia Lorena Coss Navarrete, Dr. Laura Gomez Romero, Dr. Yalbi Balderas Martinez, Dr. Mirna Vazquez Rosas Landa, M.C. Jose Antonio Ovando Ricardez, M.C. Erick Cuevas Fernandez and Andres Arredondo Cruz
  • CDSB2023, DE in scRNA-SEq and R/Bioconductor packages
  • Comunidad de Desarrolladores de Software en Bioinformática (CDSB), Nodo Nacional de Bioinformatica

Analysis of biological and biomedical transcriptomic data using Artificial Intelligence (AI) and Machine Learning methods (ML) methods with R

UNAM

Queretaro, Mexico

2022

  • Main instructor: Dr. Javier De Las Rivas (CSIC-USAL-IBSAL, Spain), Dr. Maribel Hernandez Rosales (CINVESTAV, Mexico), Dr. Enrique De Las Rosa (CSIC-USAL-IBSAL, Spain), and Dr. Flavio Spetale (CIFASIS- CONICET-UNR, Argentina).
  • ISCB-LA SoIBio BioNetMX Symposium 2022
  • RiaBio 2022

The art and method of writing a Scientific Manuscript

N/A

Virtual event

2022

  • Main instructor: Dr. Susan Marriott
  • BioScience Writers

Network analysis using igraph for R: a primer

N/A

Virtual event

2021

  • Main instructor: Dr. Guillermo de Anda Jauregui
  • 2nd Workshop in advanced Bioinformatics

Co-expression networks

N/A

Virtual event

2021

  • Main instructor: Dr. Katja Nowick
  • 2nd Workshop in advanced Bioinformatics

Network medicine

N/A

Virtual event

2021

  • Main instructor: Dr. Deisy Gypsi
  • 2nd Workshop in advanced Bioinformatics

CABANA workshop: Introduction to R and Bioconductor for genomic analyses

Centro de Investigacion y de Estudios Avanzados del IPN (Cinvestav), UGA-Langebio

Guanajuato, Mexico

2019

  • Main instructor: Dr. Cei Abreu Goodger and Dr. Benilton Carvalho
  • CABANA

Theoretical and Practical HiC Workshop: Wet-Lab and Bioinformatics

Centro de Investigacion y de Estudios Avanzados del IPN (Cinvestav), UGA-Langebio

Guanajuato, Mexico

2019

  • Main instructor: Dr. Selene Fernandez-Valverde, Dr. Francisco Perez. America Ramirez and Emilio Sotelo
  • The Royal Society

Mantenimiento correctivo de Computadoras

Universidad de Occidente Unidad Mazatlan

Sinaloa, Mexico

2012

  • Main instructor: M.C. Raymundo Magana

Science Communication

Los Neutrofilos, chile del que pica o chile del que no pica?

Paper

N/A

2023

  • Co-authors: Karr de Leon S, Coss-Navarrete EL, Brunck ME.
  • El linfocito - numero 3

Conservacion de lincRNAs en Brassicaceaes

Talk

Virtual event

2022

  • Ciclo de “Bases y Bytes: Platicas de Bioinformatica”
  • Universidad Politecnica de Sinaloa (UPSIN).

PODCAST animalitos & plantitas: EP01 El cafe mas caro del mundo con Evelia Coss

Talk

Podcast

2021

  • The Biologist Apprentice

Tercer mesa redonda “Trayectorias academicas”

Talk

Virtual event

2021

  • El Rincon de la Ciencia

Identificacion y caracterizacion de ARNs largos no codificantes conservados en Brasicaceas

Talk

Guanajuato, Mexico

2019

  • Semana Tecnologica
  • Tecnologico Nacional de Mexico, Instituto Tecnologico Superior de Purisima del Rincon